rs231400239 SNP Detail

Summary

• ID
  rs231400239
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:58423236 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACACGGCTA TGAGCCCCCA
  ACACTTGGCA AGCTGATCAG AAAGTGAGTC CAAGGCCGGT GGCTACACAG AAAGATTGAT
  CCGGGGGTCG GGGCCAAGAG GATGGGGCAA GACAAGATAA AGGAAGGCAG GAAGAATTTT
  AAATGATTGA GAAGTGATGT GGAGGTGCAT TCTACAGGAT TTGAACATCT GATTGGGAAG
  R
  GAGAAATGAG GTCTTGAGAC CCGGTTGCTT GTAAGAGGGA GCGTGAACAC TTGGAAGAGG
  AGGATGCAGC TACTTACCGG TTTTCATAGG ACTGGGGTTG AAGGCAGCTA AATAGGTGGC
  CATAAGCAGT TGAAGCAGTT CTAAAACAGC TGAAAGAACT GCACCTGGAC AGTACACTGG
  GTGCTGGGGA ATAGTTCAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss388759188	MGP_WTSI_13_58376783	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs231400239					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss388759188	MGP_WTSI_13_58376783	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:58423236 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5724	CpG island 5724	163 bp distal
Gkap1	G kinase anchoring protein 1	545 bp upstream
Rr481008	regulatory region 481008	1245 bp distal
Rr481009	regulatory region 481009	744 bp distal
Tssr120072	transcription start site region 120072	1142 bp downstream
Tssr122823	transcription start site region 122823	1307 bp upstream
Tssr122824	transcription start site region 122824	1215 bp upstream
Tssr122825	transcription start site region 122825	1084 bp upstream
Tssr122826	transcription start site region 122826	1058 bp upstream
Tssr122827	transcription start site region 122827	1045 bp upstream
Tssr122828	transcription start site region 122828	927 bp upstream
Tssr122829	transcription start site region 122829	904 bp upstream
Tssr122830	transcription start site region 122830	571 bp upstream
Tssr122831	transcription start site region 122831	225 bp downstream
Tssr122832	transcription start site region 122832	278 bp downstream