rs231417159 SNP Detail

Summary

• ID
  rs231417159
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129999845 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTTAGAGA ACGACAATAT
  CGAATTCACA CTTTAAAGCA CCCACTCTGG CTTCTCCATG GAGAAGGGAG CGGGGCTGGA
  GTTCACTAAA AAGACATTGG CGATGAGGCC AGACTACAGA GGGGTCCTGG AGCAGAGGGG
  TGGTTGGAAC ATGGAGCAAA ACCAGATGAT TGATTATATA TACATACATA TATATATTTT
  W
  TTTTCTGAGA CAGGAAGGAT GAGTTTTGTG GAAATGATCA GAGAATTCTT ACGCTGGGCT
  AGACTGCGAC ACAGTGGCAG TACTGGAGGG ACTGAGAGGA GTGGCTAATG AGCTGGGAGC
  CATGGGGGGA GGTGTTAAAG AGAGGGTGGG ACAGGAGGAG TAGATGTGAG AGGCCATTGG
  TCTTTATGAA TGAGTGTTGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
ss363243996	MGP_WTSI_4_129783296	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A	T	T	A	A	A	A	T	A	A	T	A	A	A	T	A	A	A	A	A	T	A	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
rs231417159					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A	T	T	A	A	A	A	T	A	A	T	A	A	A	T	A	A	A	A	A	T	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363243996	MGP_WTSI_4_129783296	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129999845 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14920	CpG island 14920	1206 bp proximal
Gm40258	predicted gene, 40258	within coordinates
Pef1	penta-EF hand domain containing 1	1504 bp upstream
Rr100107	regulatory region 100107	955 bp proximal
Rr367713	regulatory region 367713	1894 bp upstream
Rr398529	regulatory region 398529	1351 bp upstream
Tssr39229	transcription start site region 39229	1148 bp downstream
Tssr39230	transcription start site region 39230	1548 bp upstream
Tssr39231	transcription start site region 39231	1557 bp upstream