rs231421552 SNP Detail

Summary

• ID
  rs231421552
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:45230219 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGTATTCC TTAAAACAGA
  TGAGAACCAA GGGACAGATC AAATGAGTCA CAGGAAGCCC TGGAACTGAG GTTTTTCCTT
  GATGAAAGCT TTACAGAAAC GATTGACTAT ATTGGTGACA TTTCTGTTTC TGTACTAGAG
  TAGAAACCTG TGGAAAAAGA TTTGTTGGGC TTATAGCTAC AGGAGGAGAG TCTCTAAGTG
  R
  CCAGGAGGCA TGGTACCAGG CTGCCAGAGA GATCACATCT TCAATCACAA GTATAAAGCA
  GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA
  GATCGAGAAA GAGAGAGAGA GGAGAGAGAG ACTTGGGACC TACAACTGAA GGTCACCCTC
  TAAAACCTGA CAGTGGGACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325166362	CHEV_16_45409969	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs231421552					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:45230219 () rs orientation: forward

Symbol	Name	Function Class
2300009N04Rik	RIKEN cDNA 2300009N04 gene	847 bp upstream
Cd200	CD200 molecule	803 bp upstream
Cd200l1	CD200 molecule like 1	1912 bp downstream
Cpgi8295	CpG island 8295	893 bp distal
Gm5406	predicted gene 5406	1724 bp upstream
Rr325366	regulatory region 325366	218 bp distal
Tssr138625	transcription start site region 138625	1664 bp upstream
Tssr141234	transcription start site region 141234	906 bp upstream
Tssr141235	transcription start site region 141235	808 bp upstream