rs231424426 SNP Detail

Summary

• ID
  rs231424426
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:96142593 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTCCTTTC AGTGAGGAAA
  GCCCTGATGA GGAAAATGAA GCAACAGATG TTTCTTCTGT TACAATTGAA GTTGTTTCAT
  TCAAAATTCA ACAGTAGCTG AAATGAGGAG AGAGAGGGGG GTCATAAATC CGACCTAAAT
  GGTGAATAAA TAAAACAGCC ATTTATCATT TATTTAAAAT TCATCCTTTA TAGTCAGGAT
  Y
  TGAGAATCAA CATAACAAAA ATGAGTATAC ATTTTTGTTA AAGAGTTTTT TAAAAGGAAA
  CCTTAAAAGT TGTGTAATGA AAACAGTTTT AGTGCATTTA AGTTATAGGA AATAGAACAT
  TATGTTAGAT TTAACTCTTA AAACCAAAAG TCAAATAAAA TATATAGAAA ATGCTTAGTT
  GCAGAAGTTT GTAATTGCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323107371	CHEV_9_96160959	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs231424426					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:96142593 () rs orientation: forward

Symbol	Name	Function Class
Tfdp2	transcription factor Dp 2	within coordinates
Tssr2975	transcription start site region 2975	1306 bp downstream
Tssr86589	transcription start site region 86589	1829 bp downstream
Tssr86590	transcription start site region 86590	1814 bp downstream
Tssr86591	transcription start site region 86591	1755 bp downstream
Tssr86592	transcription start site region 86592	1738 bp downstream
Tssr86593	transcription start site region 86593	1710 bp downstream
Tssr86594	transcription start site region 86594	1527 bp downstream
Tssr86595	transcription start site region 86595	1279 bp downstream
Tssr86596	transcription start site region 86596	1263 bp downstream