rs231425974 SNP Detail

Summary

• ID
  rs231425974
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69046791 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCCACATG GTGGCTCACA
  GCCTTCTCTT ACTCCAGTTC CAGGGAACCC AATGCTACCT TATGGCCTCT GCAGACACCA
  GGCACCCAAG TGGTAAACAG ACACTCCTAC ATAGACACCC ACACATCTAA GACAAAAAGT
  TTTTTTCAAT CTTAATTCTC TCTCTCTCCT TCTCTCCCTC TTTTCTTTCC TTCCTTCCTT
  Y
  CTTTCTCTCT CCCTCTCTTT CTTTCTTTCT TTCTTTCTTT CTTTCTTTCT TTCTTTCTTT
  CTCTCTCCCT CTCTTTCTTT CTCTCTCCCT CTCTTTCTTT CTTTCCTTCT TTCTTCCTTC
  CTTCCTCTCT CTCTTTCTTT CTTCCTTCCT TTCTCTCTCT TTCCTTCTTT CCTTCTTTCT
  TTTTTTCTTT CTTTCTTCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383777869	MGP_WTSI_11_68969467	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	T	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs231425974					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	T	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383777869	MGP_WTSI_11_68969467	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69046791 () rs orientation: forward

Symbol	Name	Function Class
Alox12b	arachidonate 12-lipoxygenase, 12R type	1107 bp upstream
Cpgi3111	CpG island 3111	974 bp proximal
Rr449891	regulatory region 449891	777 bp proximal
Rr449892	regulatory region 449892	1035 bp proximal
Tssr102419	transcription start site region 102419	923 bp upstream
Tssr102420	transcription start site region 102420	948 bp upstream
Tssr102421	transcription start site region 102421	1067 bp upstream
Tssr102422	transcription start site region 102422	1088 bp upstream
Tssr102423	transcription start site region 102423	1098 bp upstream
Tssr102424	transcription start site region 102424	1119 bp upstream