rs231426450 SNP Detail

Summary

• ID
  rs231426450
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:3124048 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAAAAAAGG AAGAAGAAGA GGAGGAGGAG GAAGAAAAGA
  GGGTTCCAAG AGTTTGTGCC TGTGACCTCA GCATTCACAT CAGCTGGAAC TGCACAGCAA
  A
  GTCTGGTCTC TCAGAGTAAA GTCAAGAGGA CTAGGACTTT ATGACTATAG ATTCTGTGTA
  ATATAATAAC GGAAAACTAC TGACTCATAA ATCTGATGC                       
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323546766	CHEV_11_3074051	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs231426450					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:3124048 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr441481	regulatory region 441481			1598 bp distal
Rr441483	regulatory region 441483			1832 bp distal
Rr441484	regulatory region 441484			1098 bp distal
Rr441485	regulatory region 441485			224 bp distal
Rr441486	regulatory region 441486			within coordinates
Rr441487	regulatory region 441487			1130 bp proximal
Rr441488	regulatory region 441488			1561 bp proximal
Rr441489	regulatory region 441489			1631 bp proximal
Sfi1	Sfi1 homolog, spindle assembly associated (yeast)			Intron
				Noncoding-Transcript-Variant
Tssr106448	transcription start site region 106448			1251 bp upstream
Tssr106449	transcription start site region 106449			719 bp upstream