rs231430822 SNP Detail

Summary

• ID
  rs231430822
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:116483995 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGAAAACCT AACGAATCAA
  GACACTTCTC CGCAAAGGTT AAGAGTTACA AAGCTTCAGT CCCGTAGCCA CCCTCAAGAT
  TACTGTAAAC CTGGTAGTGA GTATATAATA AAATTCATTG CGCCCCACCG ACCCGGCAAA
  AGCAGCATCC ACTCCAAACA ATGGAGTTTT CCCGCCTCCT ACAGGCCCCG CCCACTCCTA
  R
  GAGCCAAAAC TACGACGATC AGCGTGCAAA GCCCCGCCCT CTGAGAGGCC CCACCCACCC
  GCGTCCCCTG TTCCAAGCCT CCATCCTCGT GTGGGTTTTT TTTTTTTTTT TTTTTTTTTG
  GCGCCAAATC TGTTGGCCAA TTTCTCGGTA CGTCTACAGA CTCTCTACAG AGACGCACCC
  TAGGAGTGCG CGATCAGGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321277617	CHEV_4_116299403	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs231430822					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:116483995 () rs orientation: forward

Symbol	Name	Function Class
A430091L06Rik	RIKEN cDNA A430091L06 gene	45 bp upstream
Cpgi14636	CpG island 14636	within coordinates
Nasp	nuclear autoantigenic sperm protein (histone-binding)	within coordinates
Rr99808	regulatory region 99808	within coordinates
Rr398403	regulatory region 398403	within coordinates
Rr398404	regulatory region 398404	596 bp upstream
Rr398405	regulatory region 398405	1065 bp upstream
Tssr42894	transcription start site region 42894	569 bp downstream
Tssr42895	transcription start site region 42895	688 bp downstream
Tssr42896	transcription start site region 42896	1098 bp downstream
Tssr42897	transcription start site region 42897	1123 bp downstream
Tssr42898	transcription start site region 42898	1174 bp downstream