rs231432588 SNP Detail

Summary

• ID
  rs231432588
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:87844492 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTCTTTCT CTGTCTACAG
  GTGAACTTTA AATTCCATTC TTAAATCAAA ACACACAAAC ATAATGGAAA ATACAGACTA
  ATGGCAATAT ATTACAGTAG TCACTATGAG TTTGCTTGCT ACTATGCTAG GCTTCAAATA
  AGCCATGAGA AATGAATACT TCCTCTGAGG TATTTGCAGC ATTGTGACGA GAAAATAATA
  R
  ACACATGATA AGTATTTCAT GGTAAAGAGA TGGTAAGTAT TTCATGTGAT ACTCTCAGGT
  AAATTTAAGA TTTCATTGTA TCCTGTTGAT TCTTATTTAT GTAAATGACA ACTTTAATAA
  CCAAATATGT CCTTCTGCAA GCCAGCCTAG CTACTATAGA ATAGGCATGT CATTTCTAGT
  AGTCTTTAGT TGGTACTATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss365777326	MGP_WTSI_5_88125658	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs231432588					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss365777326	MGP_WTSI_5_88125658	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:87844492 () rs orientation: forward

Symbol	Name	Function Class
Csn2	casein beta	within coordinates
Tssr46888	transcription start site region 46888	1933 bp downstream
Tssr46889	transcription start site region 46889	1914 bp downstream
Tssr46890	transcription start site region 46890	1881 bp downstream
Tssr46891	transcription start site region 46891	1868 bp downstream
Tssr46892	transcription start site region 46892	1839 bp downstream
Tssr46893	transcription start site region 46893	1813 bp downstream
Tssr46894	transcription start site region 46894	1768 bp downstream
Tssr46895	transcription start site region 46895	1748 bp downstream
Tssr46896	transcription start site region 46896	1669 bp downstream
Tssr51622	transcription start site region 51622	1994 bp upstream
Tssr51623	transcription start site region 51623	1978 bp upstream
Tssr51624	transcription start site region 51624	1961 bp upstream
Tssr51625	transcription start site region 51625	1951 bp upstream
Tssr51626	transcription start site region 51626	1939 bp upstream
Tssr51627	transcription start site region 51627	1913 bp upstream
Tssr51628	transcription start site region 51628	1803 bp upstream
Tssr51629	transcription start site region 51629	1709 bp upstream
Tssr51630	transcription start site region 51630	1661 bp upstream
Tssr51631	transcription start site region 51631	1622 bp upstream
Tssr51632	transcription start site region 51632	1363 bp upstream
Tssr51633	transcription start site region 51633	559 bp upstream
Tssr51634	transcription start site region 51634	454 bp upstream
Tssr51635	transcription start site region 51635	506 bp downstream
Tssr51636	transcription start site region 51636	532 bp downstream
Tssr51637	transcription start site region 51637	645 bp downstream
Tssr51638	transcription start site region 51638	1421 bp downstream
Tssr51639	transcription start site region 51639	1428 bp downstream