rs231436299 SNP Detail

Summary

• ID
  rs231436299
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:166900572 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCCACAGAC TGTGGAGAGA
  AGGAAGCACC AGCACCCAGT TTCCTTGTTG GAAAATGAAA ACTGAAACCT GAAACTCAAC
  TCTGATTCAG GAAACTTAAA ATCGAAACTA ATTATCCCCC CCCCCCTTAC AACTGCTTGT
  CTTACACAGG GACCCTGGGA CCCAGGGAGG CAGCCATCAC TTTCCTTCCC TCTACAGGGA
  Y
  TCTACAGCTG GCCTTAGCAG AATGCTGTGA TTTGCAATTT GTGATTCACA ATTTGACAAT
  AAAACTTAGG AAAGCTACTT CAGATTTTTT TTTAAAGATT TATTTTTTCT TGGATATTTT
  CCTTATTTAC ATTTCAAATG TTTTCCCCTT TCCAGACCTC CCCTTTGGAA ACCCCGTCTC
  ATTCATCCTC CTTAACACTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356497073	MGP_WTSI_2_166884152	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs231436299					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356497073	MGP_WTSI_2_166884152	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:166900572 () rs orientation: forward

Symbol	Name	Function Class
Gm75600	predicted gene, 75600	1900 bp upstream
Rr570435	regulatory region 570435	within coordinates
Rr570436	regulatory region 570436	770 bp proximal
Rr570437	regulatory region 570437	1774 bp proximal
Rr570438	regulatory region 570438	1911 bp proximal
Tssr21784	transcription start site region 21784	1788 bp downstream
Tssr21785	transcription start site region 21785	228 bp upstream
Tssr21786	transcription start site region 21786	1864 bp upstream
Tssr27727	transcription start site region 27727	1880 bp upstream
Tssr27728	transcription start site region 27728	1841 bp upstream
Tssr27729	transcription start site region 27729	1825 bp upstream
Tssr27730	transcription start site region 27730	1709 bp upstream
Tssr27731	transcription start site region 27731	1402 bp downstream
Tssr27732	transcription start site region 27732	1450 bp downstream
Tssr27733	transcription start site region 27733	1486 bp downstream
Tssr27734	transcription start site region 27734	1765 bp downstream
Tssr27735	transcription start site region 27735	1795 bp downstream
Znfx1	zinc finger, NFX1-type containing 1	within coordinates