rs231452455 SNP Detail

Summary

• ID
  rs231452455
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170898561 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACACCATGA GCTTGTGGCT
  CTGCAGCGGA CATCTGCTCC GCAATAACAA TTGCCCACTG GAACCCCTTC CGACCCTGCA
  ACCGTCCCTC TCTCCGTGCC ACCACCACCA CCACCACCAA GACCACCACC AGCACCGTAT
  TCCATTCTCC GACATCTCCT ATTCATAGTC CAAAAACCAA AAAAACAAAA CAAACAAATA
  Y
  ACATAATACA CAGAGTTGTG TGTGTGTGTG TGCGTGTGTT GTCTGTATGT GTGTGTATTG
  ATAGATAGAT ATAGATAGAT ACCTATACCT TTCATATATG GTTATATGTT CATATATATG
  GGTATATATA AAAGATTAAT GCGTGTGCGT GTGCGTGTGC GTGTGTGTGT GAAGTGAAAG
  AAATCGCTAC AGGGGCTTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	NZW/LacJ	SPRET/EiJ
ss352379504	MGP_WTSI_1_173001123	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	NZW/LacJ	SPRET/EiJ
rs231452455					SNP	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352379504	MGP_WTSI_1_173001123	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170898561 () rs orientation: forward

Symbol	Name	Function Class
Gm56232	predicted gene, 56232	1234 bp downstream
n-TEctc8	nuclear encoded tRNA glutamic acid 8 (anticodon CTC)	800 bp downstream
n-TGtcc5	nuclear encoded tRNA glycine 5 (anticodon TCC)	1342 bp downstream
Rr423202	regulatory region 423202	549 bp distal
Rr423203	regulatory region 423203	604 bp proximal
Rr423204	regulatory region 423204	1487 bp proximal