rs231480486 SNP Detail

Summary

• ID
  rs231480486
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:26052037 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGCACGGCT TGGGCTCCGC
  GCCCGGCCAC CTAGATCTCG CAGCCCGCGC AGCGATCAGC TCCGCCCGGT CGGCGATCCG
  CCACCGGAAC TTCCGGTGTG GGGCGGAGCT GGCATGGGGA CACGTGAGCA AAGGCGGAGC
  CTCGTGGATT GAGCCAGTTC CCTTAGCTCT GAGAAGCTTC CGCCGCGCTC TACAGGCCCC
  R
  CCCTACAGTA ACCGAGACCT ACCCTGCTCA GACCAAGGCT CCGCCCATCG GCGCTCAAGC
  CCCGCCCTCC GGCCCCAAGC TGGGCGAACG TGGCAGCGGT CATTGAGAAG TGGCCTTCCG
  AGGGCCGGTC ACTAGGCCCG GGTCCTAGCG CACCACCAGG GCACACACGG GCTCACGCGA
  CAGCCTGGGA ACGTCTGGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss397885791	MGP_WTSI_17_25970008	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs231480486					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397885791	MGP_WTSI_17_25970008	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:26052037 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8785	CpG island 8785	within coordinates
Gm20683	predicted gene 20683	1402 bp downstream
Gm56915	predicted gene, 56915	within coordinates
Jmjd8	jumonji domain containing 8	1220 bp downstream
Mir3082	microRNA 3082	1635 bp upstream
Rhbdl1	rhomboid like 1	1402 bp downstream
Rr405106	regulatory region 405106	within coordinates
Rr523679	regulatory region 523679	85 bp distal
Rr523680	regulatory region 523680	288 bp proximal
Stub1	STIP1 homology and U-Box containing protein 1	144 bp upstream
Tssr143193	transcription start site region 143193	44 bp upstream
Tssr146863	transcription start site region 146863	186 bp upstream
Tssr146864	transcription start site region 146864	97 bp upstream
Tssr146865	transcription start site region 146865	302 bp downstream