rs231496328 SNP Detail

Summary

• ID
  rs231496328
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:108217903 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAGGCCAT ACTCCAGAAG
  GAGGAAGCCA GTAGACAAGG GCAGACTGCC TAACGGTTAA GGCCACCCTA ACCCCAAACG
  TGAACTTCTC CTTTCTGAGT TTTTGGTGGA TGAGGAAGTG ACTGTGTGCC CCTGTTCACA
  CAAGACTCTA GAAATCTAGA TCTTTGCCCA CAGAAGTCTG TTTTGCACAG CTGCAACAGC
  Y
  TTGCACAGTG TTACCAGCTT CTCTTTGCTG CATGAACCCA CACTGCTACT CAGTGCCTTA
  ATTTATGCTG GGTGTTGTGA GATTCCGACG GAAAAGGTGG AAGGCAGGTG TAGAGTGTGT
  GGCAGGAGGG GTGGGGGGTG TGTGTCCTGA GACCAGCCTG GGCCTACTTG AGGCAGAAAA
  AATGATTGTC AAACCTTGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378864979	MGP_WTSI_9_108243035	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs231496328					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378864979	MGP_WTSI_9_108243035	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:108217903 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22334	CpG island 22334	529 bp distal
Gm57050	predicted gene, 57050	570 bp upstream
Gpx1	glutathione peroxidase 1	362 bp downstream
Rr383883	regulatory region 383883	886 bp downstream
Rr686785	regulatory region 686785	1418 bp distal
Rr686786	regulatory region 686786	80 bp distal
Rr686787	regulatory region 686787	921 bp proximal
Tssr3010	transcription start site region 3010	954 bp downstream
Tssr87090	transcription start site region 87090	1634 bp downstream
Tssr87091	transcription start site region 87091	1606 bp downstream
Tssr87092	transcription start site region 87092	1472 bp downstream
Tssr87093	transcription start site region 87093	1457 bp downstream
Tssr87094	transcription start site region 87094	1420 bp downstream
Tssr87095	transcription start site region 87095	1405 bp downstream
Tssr87096	transcription start site region 87096	1394 bp downstream
Tssr87097	transcription start site region 87097	784 bp downstream
Tssr87098	transcription start site region 87098	717 bp downstream
Tssr87099	transcription start site region 87099	388 bp downstream
Tssr91519	transcription start site region 91519	811 bp upstream
Tssr91520	transcription start site region 91520	720 bp upstream
Tssr91521	transcription start site region 91521	624 bp upstream
Tssr91522	transcription start site region 91522	548 bp upstream
Tssr91523	transcription start site region 91523	363 bp upstream