rs231496950 SNP Detail

Summary

• ID
  rs231496950
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69491147 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAAACTCA GAGCTGAGCT
  GGAGGAGGGT GTCTGACGCT TTCAGGCTGG CATGCAGAAA GGGAAGACCT TAGTGACCAG
  TTAGCAACTT GCAAGGAGTA GCCAGAGAGA GGATGGGGGT GGGTAGATCT GGGCTTAGGG
  AGTCCCCCCA GCCAGCTGAC GTTTCCAAGG TGGCTGCTGG GGATAGAGCC AAGACAGCGG
  Y
  CCCTCCCCCA CAGAGCTCCC TGGGAAGGAG AATTTGAAAG ATATTCTGGG AAGGCCAGTG
  GGGGAAGGGA GCCATCAGTT AAAAAACAAA GTGGATATTC AGAGCAGGTC AAGCCCGCCT
  GAGTAGGAGC CGTTTGGATG ACAGGAGGGA CCAGGAAGAA GTTAAAAGTC TAAGCCTACT
  AGAGAATTTT CTAGAAGAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383787292	MGP_WTSI_11_69413823	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs231496950					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383787292	MGP_WTSI_11_69413823	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69491147 () rs orientation: forward

Symbol	Name	Function Class
Atp1b2	ATPase, Na+/K+ transporting, beta 2 polypeptide	within coordinates
Gm72066	predicted gene, 72066	within coordinates
Rr386229	regulatory region 386229	within coordinates
Rr450033	regulatory region 450033	582 bp distal
Rr450034	regulatory region 450034	711 bp distal
Rr450035	regulatory region 450035	within coordinates
Tssr3544	transcription start site region 3544	374 bp downstream
Tssr102487	transcription start site region 102487	281 bp downstream
Tssr102488	transcription start site region 102488	842 bp upstream
Tssr102489	transcription start site region 102489	917 bp upstream
Tssr108712	transcription start site region 108712	303 bp upstream
Tssr108713	transcription start site region 108713	152 bp upstream
Tssr108714	transcription start site region 108714	84 bp upstream
Tssr108715	transcription start site region 108715	50 bp upstream
Tssr108716	transcription start site region 108716	238 bp downstream
Tssr108717	transcription start site region 108717	263 bp downstream
Tssr108718	transcription start site region 108718	322 bp downstream
Tssr108719	transcription start site region 108719	333 bp downstream
Tssr108720	transcription start site region 108720	337 bp downstream
Tssr108721	transcription start site region 108721	351 bp downstream
Tssr108722	transcription start site region 108722	432 bp downstream
Tssr108723	transcription start site region 108723	460 bp downstream
Tssr108724	transcription start site region 108724	513 bp downstream
Tssr108725	transcription start site region 108725	537 bp downstream
Tssr108726	transcription start site region 108726	632 bp downstream
Tssr108727	transcription start site region 108727	654 bp downstream
Tssr108728	transcription start site region 108728	698 bp downstream
Tssr108729	transcription start site region 108729	785 bp downstream
Tssr108730	transcription start site region 108730	817 bp downstream
Tssr108731	transcription start site region 108731	848 bp downstream
Tssr108732	transcription start site region 108732	909 bp downstream