rs231501403 SNP Detail

Summary

• ID
  rs231501403
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:58279178 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTTGCTGC CTGGCTCACG
  TGTAATTGCT ATCATTGTCA AAGCTCTCAC CACAGTGGTG AGCCTACACA GGTGCTTACT
  GTTACCTAAG TCCCCAGTTT ACCTCAGGGT CACTCCTGAT GTAGTGCATT CCACCATGAC
  AGTGTAACAT AGAGGACAGT CTTGTCCTGA AAGACGTCTG TGAGCACCTG CTCAGGCTTT
  K
  CTTGTGCCCA ACTCTCTGGC AGCCACTGGT CTCTCTTTTT TTTTTTTTAA CTGCCTCTAT
  AAACTTTCAT ATCTCAGAAT TTCTGCTTTC TCTCCCTCTC ACTTTCTCAG TCAGTCTCTG
  TGTCTTTCTG TCTGTCTTCT CTGTCTCCCA GAGGCCTCAC ACATGTAAAA CATACATTCG
  TCCACTGCAA AGGTCACACT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383518410	MGP_WTSI_11_58201854	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs231501403					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383518410	MGP_WTSI_11_58201854	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:58279178 () rs orientation: forward

Symbol	Name	Function Class
Lypd8	LY6/PLAUR domain containing 8	within coordinates
Tssr3508	transcription start site region 3508	1955 bp downstream
Tssr101739	transcription start site region 101739	1591 bp downstream
Tssr101740	transcription start site region 101740	1546 bp downstream
Tssr101741	transcription start site region 101741	1528 bp downstream
Tssr101742	transcription start site region 101742	1736 bp upstream
Tssr101743	transcription start site region 101743	1805 bp upstream
Tssr101744	transcription start site region 101744	1887 bp upstream
Tssr101745	transcription start site region 101745	1916 bp upstream
Tssr108157	transcription start site region 108157	1548 bp upstream
Tssr108158	transcription start site region 108158	1516 bp upstream
Tssr108159	transcription start site region 108159	1799 bp downstream
Tssr108160	transcription start site region 108160	1812 bp downstream
Tssr108161	transcription start site region 108161	1877 bp downstream
Tssr108162	transcription start site region 108162	1906 bp downstream