rs231505175 SNP Detail

Summary

• ID
  rs231505175
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:139453739 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTGTTCCTC TTCCTGATGG TCTCCATCTT
  CCTTCAAAAT ACAGTCTTCT TTATACTTTC ATATGATCAC ACACATGCAC ACACACACAC
  ATGTCTCTCt gtgtgtgtgt ctgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt
  R
  tAGAGAGAGA GCTGGGGGGG CAGAAATTGA TTCTGCATAT AAGAGAATTT GTCTTATTTT
  CCTATTACCC TTAATTTTTA AAATTCCAGA AACCTTTGGC ATGTTAAAAG TCACTAATTC
  ATAAGGACTC TGGGAAGTCC ATCCTTTCTT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320527420	CHEV_2_139437555	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs231505175					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:139453739 () rs orientation: forward

Symbol	Name	Function Class
Rr566030	regulatory region 566030	1478 bp distal
Sptlc3	serine palmitoyltransferase, long chain base subunit 3	Intron