rs231507891 SNP Detail

Summary

• ID
  rs231507891
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:57015580 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAACTTCAGC ACTGGGAGAC
  AAAGGTATAC AGATCTCTCT GAACTTGAGG CCAGCCTGGT CTACAGATTT CCAGGCCAAT
  CAGGAACTCT TTTGTCTAGA GGAAAACAAA CAAAAATGTG TTCCACAAGC ACTGTGACAA
  CTTACTCCTG AATAAGGCTT GCCCATAATG AACTAGCACC ATAGCACCTT CAAGGCTTCA
  Y
  CATATCCACT TTCTCTGTGA TGGAAATTTC TTCTGGTATT CCATGAAATT TGTGTCTGGC
  GTTGTCCTTG AGTGTAGTGT CCTTCAGTCT GTGCTTAGAC TTGTGTGAGC ATTGTTTGTG
  TTCCTAGCTG AGGAATGCTC TGAAGGGAAT GCTTGCTGTC AGAGAGCCTC TTTCCGCTTT
  GAGACTCTTC CAGGCAGTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398562767	MGP_WTSI_17_56848003	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs231507891					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398562767	MGP_WTSI_17_56848003	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:57015580 () rs orientation: forward

Symbol	Name	Function Class
Ranbp3	RAN binding protein 3	within coordinates
Rr392775	regulatory region 392775	within coordinates
Rr529157	regulatory region 529157	1703 bp distal
Tssr145328	transcription start site region 145328	278 bp upstream
Tssr145329	transcription start site region 145329	1326 bp upstream
Tssr145330	transcription start site region 145330	1356 bp upstream
Tssr145331	transcription start site region 145331	1401 bp upstream
Tssr145332	transcription start site region 145332	1424 bp upstream
Tssr145333	transcription start site region 145333	1448 bp upstream
Tssr145334	transcription start site region 145334	1484 bp upstream
Tssr148830	transcription start site region 148830	1260 bp downstream