rs231509241 SNP Detail

Summary

• ID
  rs231509241
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:117548613 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTGTGCAG TTTCATGGGA
  TTGGGGCATG AGCAGGATGG GGGGATGGGA GGACAGGGCA AAAGGCAAGC AGGCATGCAC
  TCTTAGCTTA AAGCCCTGGG TTCCCTCCCC AGCACCTGTG GGAATGATGC TGCACTTGTG
  TAATCCCAGC ACTTTGGAGG TGAAGACAGG AGGGTCAGAA GTTCAAAACC GGGCGTGATG
  S
  CGCACGCCTT TAATCCCAGC ACTCGGGAGG CAGAGGCAGG TGGATTTCTG AGTTCGAGGC
  CAGCCTGGTC TACAGAGTGA GTTCCAGGAC AGCCAGGGCT ATACAGAGAA ACCCTGTCTC
  GAAAAAACCA AAAAAAAAAA AAAAAAAAAA AAAAACAAGT TCAAAGTCAT CCTTAGCTAC
  AGTGAGATTG AGGCCAGCCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323498909	CHEV_10_117149764	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs231509241					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:117548613 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2237	CpG island 2237	1600 bp distal
Gm56970	predicted gene, 56970	1175 bp downstream
Gm67727	predicted gene, 67727	within coordinates
Mdm2	transformed mouse 3T3 cell double minute 2	1950 bp upstream
Rr212986	regulatory region 212986	1188 bp proximal
Rr224309	regulatory region 224309	1012 bp distal
Rr385357	regulatory region 385357	157 bp downstream
Tssr95923	transcription start site region 95923	1761 bp downstream
Tssr95924	transcription start site region 95924	952 bp downstream
Tssr99468	transcription start site region 99468	1972 bp upstream
Tssr99469	transcription start site region 99469	1935 bp upstream