rs231522383 SNP Detail

Summary

• ID
  rs231522383
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:24097609 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATAACTCAG TGAATCTGGT
  GGCATTGAGC ACTCTTCATA AACAGCCCTC CAACCAATCA CTGCCCTGAT GGTTACCTTG
  AATATGAAAA ACTCGTGCTT TCTGTCTCCA GGCTTCAACA ATAAAAAAAT TCTTCACGGG
  CTGGAGAGAA GGCTCAGCGG TTAAGAGCAC TGGCTGCTCT TCCAGAGGTC CTGAGTTCGA
  W
  TCCCAGCAAC CACATGGTGG CTCACAACCA TCTGTAATGG GATCTGATGC CCTCTTCTGG
  TGTGTCTGAT GACAGCTACA GTGTACTCAC TATATATATA TCCATCCTTT ATAAGCTGGC
  CATGTGGCCC AGGCAGCAGT GTGCTTACCT AGCATGCATA ACATGCATGG GGCTCTAGGT
  TTAATCCCGT GGAGTGTGCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370783878	MGP_WTSI_7_25183203	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	T	T	T	T	T	A	A	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	A	T	T	T	A	T	T	A	T	A	T	A	T	T	T	T	T	T	T	A	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs231522383					SNP	A	A	T	T	T	T	T	A	A	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	A	T	T	T	A	T	T	A	T	A	T	A	T	T	T	T	T	T	T	A	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370783878	MGP_WTSI_7_25183203	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:24097609 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18537	CpG island 18537	1002 bp proximal
Gm74022	predicted gene, 74022	827 bp downstream
Rr643435	regulatory region 643435	801 bp distal
Rr643436	regulatory region 643436	44 bp proximal
Rr643437	regulatory region 643437	945 bp proximal
Rr643438	regulatory region 643438	1446 bp proximal
Rr643439	regulatory region 643439	1741 bp proximal
Smg9	SMG9 nonsense mediated mRNA decay factor	1497 bp upstream
Tssr64959	transcription start site region 64959	1422 bp upstream
Tssr64960	transcription start site region 64960	1490 bp upstream
Tssr64961	transcription start site region 64961	1629 bp upstream
Tssr64962	transcription start site region 64962	1775 bp upstream
Tssr64963	transcription start site region 64963	1793 bp upstream
Tssr64964	transcription start site region 64964	1829 bp upstream
Tssr71075	transcription start site region 71075	1674 bp downstream