rs231532078 SNP Detail

Summary

• ID
  rs231532078
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:102523850 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGAAATTCC ATGACTCTAG
  AAGTCAGTAT GGAGGGGGTA TAGATGGGCT GTCTCAGTCT TATAGGCTGA GTGATGGACA
  CTGCATTTTA GCACTGAATC AATGAAGATT CGAATTTCTC TAAGTAGAAG TGGGCTTGGG
  ATAGGTCTGA AAGTATCTGG GCCTGGGGCT AGGACTGGGC TGGGGCAGGG CTGGACTGGA
  T
  TGGGTTGGTT GGGTGGGGCA GGGGCAGGGG CAGGGGTAGG GGCTGGGGCT GGGGCTGGGG
  CAGGGGCTGG GGCAGGGGCA GGGGCTGGGG CTGGGGCAGG GGCTGGGGCT GGGGCTGGGG
  CAGGGGCTGG GGCTGGGCCT GGGGCTGGGG CAGCAATAGC AGCAGCACTA TTTGCTGAGT
  CTTGAGGAGA ATCTAGATGC                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss404206060	MGP_WTSI_X_100675583	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs231532078					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss404206060	MGP_WTSI_X_100675583	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:102523850 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22887	CpG island 22887	1833 bp proximal
Gm26992	predicted gene, 26992	within coordinates
Gm55587	predicted gene, 55587	702 bp upstream
Rr693003	regulatory region 693003	1043 bp proximal
Rr693004	regulatory region 693004	1486 bp proximal
Tsix	X (inactive)-specific transcript, opposite strand	within coordinates
Tssr163949	transcription start site region 163949	266 bp downstream
Tssr163950	transcription start site region 163950	319 bp downstream
Tssr163951	transcription start site region 163951	449 bp downstream
Tssr163952	transcription start site region 163952	539 bp downstream
Tssr163953	transcription start site region 163953	639 bp downstream
Xist	inactive X specific transcripts	within coordinates