rs231538045 SNP Detail

Summary

• ID
  rs231538045
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:5912505 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATTTTGGT TTTGTTTTGA
  TATTTGTATG TCCCAAATTT AAAAGTCTTA ACATTTTGCT TGCGGAACGC AGTAGTTCTT
  TTTGAATTCA AGGCCATTTG CAGTTTCTTT TCCGTCTGGA TAATTTCTTA TCATTCACGT
  ATGCCTGCCT TGTTTTTCTT ACCTGCTTTT CTTGTTGACT GCGCGGCGGG TGTGTGTGTG
  K
  GGGGGTGCTG TTTGCACACA AGTGACTTGT CAGTCATATG ACAATGAGTC CATTCCTAGT
  TGCTTCGGGT CTTACTTTGG GCAAGAAAAA TCTCTAATTC CGGCATTTTA GTGGAACTAG
  AATTTGGGGC AACCGGAATA AAAGAAACAC CCCCTACCCC TTCTAAGTCA TAGGATTCTG
  TGAGTGGCAA AAATATTCTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss387605989	MGP_WTSI_13_5861752	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs231538045					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387605989	MGP_WTSI_13_5861752	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:5912505 () rs orientation: forward

Symbol	Name	Function Class
B230207M22Rik	RIKEN cDNA B230207M22 gene	1308 bp upstream
Cpgi5253	CpG island 5253	570 bp distal
Gm61045	predicted gene, 61045	1975 bp downstream
Klf6	Kruppel-like transcription factor 6	within coordinates
Rr387905	regulatory region 387905	within coordinates
Tssr118237	transcription start site region 118237	1005 bp downstream
Tssr118238	transcription start site region 118238	980 bp downstream
Tssr118239	transcription start site region 118239	956 bp downstream
Tssr118240	transcription start site region 118240	942 bp downstream
Tssr118241	transcription start site region 118241	869 bp downstream
Tssr118242	transcription start site region 118242	833 bp downstream
Tssr118243	transcription start site region 118243	631 bp downstream
Tssr118244	transcription start site region 118244	93 bp upstream
Tssr118245	transcription start site region 118245	351 bp upstream
Tssr118246	transcription start site region 118246	1309 bp upstream
Tssr118247	transcription start site region 118247	1375 bp upstream
Tssr118248	transcription start site region 118248	1980 bp upstream
Tssr121315	transcription start site region 121315	1690 bp upstream
Tssr121316	transcription start site region 121316	1333 bp upstream
Tssr121317	transcription start site region 121317	1302 bp upstream
Tssr121318	transcription start site region 121318	1225 bp upstream
Tssr121319	transcription start site region 121319	1799 bp downstream
Tssr121320	transcription start site region 121320	1823 bp downstream
Tssr121321	transcription start site region 121321	1846 bp downstream
Tssr121322	transcription start site region 121322	1867 bp downstream