rs231541710 SNP Detail

Summary

• ID
  rs231541710
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:51323306 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGATACTC AAGCTATGAT
  GACACCATCT GGGTGAGTCT ACCCCACCGA GAGAAAGGCA GGCCGGTCTA GCGAGAAGGG
  GCAGAAAGTC TGTTTCCAGA GAGGAGGCGG CGGCGGCGGA AGCGTCATTG GCGGCCCTCC
  CAGGCACACG GCACTGGCAG GACCGGCAGA GCCAACTCTG AAATCCGCGG CTCCGCAGGC
  M
  GGCCCGGCCT CCGCGTTCCC GGCAGGCTCC GGTGCATCGA GGGTGGGGAA GAGCGGGTCA
  CCGCGCCTGC GCGTTGGGAG GTGTGACCCG GGTGGGAAAG CCCTCCGAGT CCGCCATTTT
  GGCTGCCTCT GTCGGTCTTT TCAGTTACCA CGTGAACCGC CGACGGAGAC CCGGGAGGGG
  GGAGGTGGCG GCGGCGTTAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357930102	MGP_WTSI_3_51219807	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs231541710					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357930102	MGP_WTSI_3_51219807	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:51323306 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13139	CpG island 13139	within coordinates
Gm50622	predicted gene, 50622	498 bp upstream
Naa15	N(alpha)-acetyltransferase 15, NatA auxiliary subunit	mRNA-UTR
Rr397658	regulatory region 397658	within coordinates
Rr576315	regulatory region 576315	within coordinates
Rr576316	regulatory region 576316	142 bp proximal
Rr576317	regulatory region 576317	1822 bp proximal
Tssr29053	transcription start site region 29053	77 bp upstream
Tssr29054	transcription start site region 29054	101 bp upstream
Tssr29055	transcription start site region 29055	716 bp upstream