rs231545679 SNP Detail

Summary

• ID
  rs231545679
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:115708465 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAACTCAG GCCATCACAA
  CAACCCTCTC GTTTTTAATT TTTGATGTTT TTCAAGGCAG GGTCTCTACG CAGCCCAAGG
  TGACCTTCAA ATTAGGATTC TTCTGCCTCA ACCGTCAGAG CAACTAGAGT TACAGGTGAG
  TGCCACAGTA CCATGCCTGG CATGCCAGGT TTCTCCTGTG TGTGTGTGTG TATGCGTGTG
  C
  ATGTGCGTGT GTGTGTGTTA CTGTGTTGCC TTGGGTGACT TGAAACTCCC TGTGTAGACC
  AAGCCGGCTT TGATTTCACA GATATCCACC TGCCTCTGGC TCCAGAGTAC TAGGATTAAA
  AGCATGTGCC ACCATACCCA GCTATTTGTT TGTTTGTTTG TTTGTTTATG AGACAGGGTT
  TCACTGTATA ATGGTAGCTG                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	SWR/J	ZALENDE/EiJ
ss369758788	MGP_WTSI_6_115681522	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	SWR/J	ZALENDE/EiJ
rs231545679					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369758788	MGP_WTSI_6_115681522	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115708465 () rs orientation: forward

Symbol	Name	Function Class
Rr132360	regulatory region 132360	736 bp proximal
Rr147096	regulatory region 147096	937 bp proximal
Tmem40	transmembrane protein 40	within coordinates
Tssr58323	transcription start site region 58323	458 bp upstream
Tssr62527	transcription start site region 62527	414 bp upstream
Tssr62528	transcription start site region 62528	389 bp upstream