rs231550804 SNP Detail

Summary

• ID
  rs231550804
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:145743319 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CGAGTGTCC CATGTGCTGT CCAGTGGAGA
  AGTAAGAGGA CACTGCCCTG TGGATGCTGA CCAGCGGTCC TGAGCACCTT GGCCATTTAT
  TTACTCTGTT ttttattgat gtttgacaca gggtcttgct atgtagcaca ggctggtctg
  R
  aagacaagat tctccttcat ctttctaagt cctgggatca TGTTTGAATA TGCTGTGTGT
  ATTTTACTTA TAGTTTTCTT TGTATAATGA TACACTTATT CATGAAAAAA AGCAAATTTA
  CTTACATTCA CTGGCTTAAA ACAtttttat                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320538604	CHEV_2_145727135	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs231550804					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:145743319 () rs orientation: forward

Symbol	Name	Function Class
Gm74898	predicted gene, 74898	within coordinates
Gm74902	predicted gene, 74902	964 bp upstream
Naa20	N(alpha)-acetyltransferase 20, NatB catalytic subunit	700 bp upstream
Rr374012	regulatory region 374012	within coordinates
Rr397366	regulatory region 397366	1633 bp upstream
Rr566598	regulatory region 566598	1503 bp proximal
Rr566599	regulatory region 566599	1796 bp proximal
Rr566600	regulatory region 566600	1906 bp proximal
Tssr20600	transcription start site region 20600	1823 bp upstream
Tssr20601	transcription start site region 20601	1835 bp upstream