rs231552088 SNP Detail

Summary

• ID
  rs231552088
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:35022843 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGAGGCAG AGGCAAGCAG
  ATCTGAGTTC TAGGCCAGCC TGATCTATAT AGTGAGCTCT AAGACAGCTA GGGCTACACA
  GTGAGCAAGG CAGACAAGAC CCTAGAGCTT GAAGTCCTAA ACCTTCCAGG AGGAAGACAC
  CTTACAAGTG TTCAGATCCA TGCCACACTA CGAACATGCC TGCCAGTCCT TTGTCTTTCC
  S
  CGGCACTGTC CCCGTTTCTG TCAAGGTCAC GGATGTGTCT CAATGACTTT CAATGGCCAT
  CGCACAGCCT GCTTCTAAAA CTTGCAGGTA GCCATCTGAA GAAGCCCTAG CTGCTGCCTT
  TCCCTACCCA GCTGGTGCAG TCTTCGACAA GGAGATGAAC AGACCACTTC CATGAAAATG
  TGCATCTCCA CCCTCTGGTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322899076	CHEV_9_34919132	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs231552088					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:35022843 () rs orientation: forward

Symbol	Name	Function Class
Rr206179	regulatory region 206179	157 bp proximal
Rr383192	regulatory region 383192	within coordinates
St3gal4	ST3 beta-galactoside alpha-2,3-sialyltransferase 4	within coordinates