rs231552359 SNP Detail

Summary

• ID
  rs231552359
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:101900742 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGGACCCC TTACTTCTTC
  TTTGGCCCTT AGGCAAATTC CTCCCAATGG GAAGAGAATA AATTGGAGGG GCTAGGGGAA
  ATTTGGGAGG GCAGAACTAG TGTTTGGTAT TTAATGGGAA GAGGTTTGTG AGTCCCAAAA
  ATAACAGGGT CCTTAAGTGA GGTTTGTAAA TCCCCAAAAT AACAGGATCA GATTCAAGTG
  R
  CTTCAATGAA GCTATTAAAA ATACGTTCCA AGCCAGGTGT GGTAGCACGT TTGTAATCTC
  AGCATTCCAG AGGTGGAGGC AGGAGGTTCA GAAGTTCGAG GCCAGCCTGG ACTATATAAG
  ACCTTACCTA CCTTAATAAA TAAAAAGTTC CCGAGTTCAA GGCCAGCCTG GTCTACATTC
  CAGGACAGCC AAGGCTACAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322353673	CHEV_7_109400049	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs231552359					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:101900742 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19524	CpG island 19524	551 bp distal
Rhog	ras homolog family member G	1417 bp upstream
Rr652562	regulatory region 652562	1458 bp distal
Rr652563	regulatory region 652563	922 bp distal
Rr652564	regulatory region 652564	593 bp distal
Tssr2354	transcription start site region 2354	1259 bp downstream
Tssr68328	transcription start site region 68328	1842 bp downstream
Tssr68329	transcription start site region 68329	1821 bp downstream
Tssr68330	transcription start site region 68330	1280 bp downstream
Tssr73942	transcription start site region 73942	1976 bp upstream
Tssr73943	transcription start site region 73943	1449 bp upstream
Tssr73944	transcription start site region 73944	1412 bp upstream
Tssr73945	transcription start site region 73945	1397 bp upstream
Tssr73946	transcription start site region 73946	1201 bp upstream
Tssr73947	transcription start site region 73947	1056 bp upstream
Tssr73948	transcription start site region 73948	1020 bp upstream
Tssr73949	transcription start site region 73949	987 bp upstream
Tssr73950	transcription start site region 73950	940 bp upstream