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rs231556982 SNP Detail
Summary
  • ID
    rs231556982
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr17:84494252 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TTGTACTTGG GGTGCCGGGT
GAGGCTGCGC AGCTCGTGGA AGCCGTGCGC GAACTGGCAC TTCTCGCCGT ACTTGCACGT
GCCGCTCTCC TCGAAGGGCC GGCACAGCTC CGTCTTGTAG CGCGTGGAGT TGATCTGGGA
GCCGCTGCCC CCCTTCTGCT GCTGCTGCAG GTGCAGGAGG TGCTGGCTGC GCTCCCCGTT
Y
TCGCTGAACG AGCGGTCCCG AAATTTGCTC TCCTTGGTGA CCAGCGCCGT GCCGCTGCCC
CCCGAAGGCT CCTTGAGCTG GCCGTAGGAG GCCAGACCGC CTCCGCCTGC GGGGCCACAG
CTGCTGCCGC CGCCGTTAGG GGCGCCCGGG AACTTCGGCG AGCAGCTGCC CGGACTGGGC
ACAGGGTGGG CAAGCGCGTG                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss399282276 MGP_WTSI_17_84586164 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs231556982 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss399282276 MGP_WTSI_17_84586164 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr17:84494252 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Cpgi9565 CpG island 9565 within coordinates
Cpgi9566 CpG island 9566 787 bp proximal
Gm56881 predicted gene, 56881 1323 bp upstream
Rr340271 regulatory region 340271 within coordinates
Rr405496 regulatory region 405496 1049 bp upstream
Tssr146044 transcription start site region 146044 1063 bp downstream
Tssr146045 transcription start site region 146045 266 bp upstream
Tssr146046 transcription start site region 146046 1780 bp upstream
Tssr149650 transcription start site region 149650 1237 bp upstream
Tssr149651 transcription start site region 149651 1183 bp upstream
Tssr149652 transcription start site region 149652 803 bp upstream
Tssr149653 transcription start site region 149653 751 bp upstream
Tssr149654 transcription start site region 149654 627 bp upstream
Tssr149655 transcription start site region 149655 483 bp upstream
Tssr149656 transcription start site region 149656 442 bp upstream
Tssr149657 transcription start site region 149657 212 bp upstream
Tssr149658 transcription start site region 149658 169 bp upstream
Tssr149659 transcription start site region 149659 133 bp upstream
Tssr149660 transcription start site region 149660 107 bp upstream
Tssr149661 transcription start site region 149661 44 bp upstream
Tssr149662 transcription start site region 149662 4 bp upstream
Tssr149663 transcription start site region 149663 48 bp downstream
Tssr149664 transcription start site region 149664 89 bp downstream
Tssr149665 transcription start site region 149665 134 bp downstream
Tssr149666 transcription start site region 149666 203 bp downstream
Tssr149667 transcription start site region 149667 292 bp downstream
Tssr149668 transcription start site region 149668 347 bp downstream
Tssr149669 transcription start site region 149669 380 bp downstream
Tssr149670 transcription start site region 149670 913 bp downstream
Tssr149671 transcription start site region 149671 1003 bp downstream
Tssr149672 transcription start site region 149672 1115 bp downstream
Zfp36l2 zinc finger protein 36, C3H type-like 2 within coordinates
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory