rs231559209 SNP Detail

Summary

• ID
  rs231559209
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:45356944 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTACTACG TTCCCGGATC
  CTACACACGC ACACACCCCA TTCCCCAAGT GGATGGTGTT GCATCCTGCC TCCCAGTCTT
  GCAGAAGAGA ATATCGGGAT CCCTCTTCTG GCTTCTACAG AGGAGCTTTC CCATGTCCCT
  GTGTTGGGGA CCTAGGATCT CAGAACTGTG GGAATCTGGA TGGCAAAGAG CTTGGCAGGC
  M
  GGTTCTCCCA CGATCCTCCC CCATAGCGCG GGATGGGTGG GTAGAATCAT TGTAGATGTT
  GGAGCTGAGA CCAAAAGGAA CAAGAAGGGA GGCGACCCCA ATCAAGACAA GGAGTCTCGA
  TGTGGGACGC CTGGGTACAC CTGTCCCTGA TCCGACCTCC AGGCAAAAAC CAGTGCTGCA
  CATTCCCTCG CCACGTGAGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss371182947	MGP_WTSI_7_52962890	EVA_MGPV3	EVA_MGPV3	f	SNP	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs231559209					SNP	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss371182947	MGP_WTSI_7_52962890	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45356944 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19081	CpG island 19081	1852 bp distal
Cpgi19082	CpG island 19082	within coordinates
Dbp	D site albumin promoter binding protein	within coordinates
Sphk2	sphingosine kinase 2	1947 bp downstream
Tssr66618	transcription start site region 66618	1988 bp downstream
Tssr66619	transcription start site region 66619	1300 bp downstream
Tssr66620	transcription start site region 66620	1272 bp downstream
Tssr66621	transcription start site region 66621	378 bp downstream
Tssr66622	transcription start site region 66622	292 bp upstream
Tssr66623	transcription start site region 66623	379 bp upstream
Tssr66624	transcription start site region 66624	631 bp upstream
Tssr66625	transcription start site region 66625	675 bp upstream
Tssr72444	transcription start site region 72444	601 bp upstream