rs231564283 SNP Detail

Summary

• ID
  rs231564283
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:71146242 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGTGTGAGAT GTGCAACGAC TTGTTTTTCC AACCCTCCTC
  AGCCCTCCCT CCAAGTCACT CCCTAGCCAT ATCAGCTCAG GTCTGTCCTG GGAGGGGGGG
  K
  TTGCTCTGAG GGACCCCAGA CCTGGGCTCT ACAAATACCT GCCTCCCAGT TCTTCAAAAA
  CAGGAGGTCT GTGTGCACAG CTGCCTCAGT TTCCCCCAC                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CE/J	CZECHII/EiJ	JF1/MsJ	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	PWK/PhJ	SEA/GnJ	SM/J	SPRET/EiJ	ZALENDE/EiJ
ss375104744	MGP_WTSI_8_73217491	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CE/J	CZECHII/EiJ	JF1/MsJ	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	PWK/PhJ	SEA/GnJ	SM/J	SPRET/EiJ	ZALENDE/EiJ
rs231564283					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375104744	MGP_WTSI_8_73217491	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:71146242 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20484	CpG island 20484	1296 bp distal
Cpgi20485	CpG island 20485	1830 bp proximal
Gm39191	predicted gene, 39191	1237 bp upstream
Gm64207	predicted gene, 64207	1742 bp upstream
Gm64347	predicted gene, 64347	within coordinates
Rr368548	regulatory region 368548	1950 bp upstream
Rr400910	regulatory region 400910	1687 bp upstream
Rr664886	regulatory region 664886	947 bp distal
Rr664887	regulatory region 664887	16 bp proximal
Rr664888	regulatory region 664888	1464 bp proximal