rs231579139 SNP Detail

Summary

• ID
  rs231579139
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:36006968 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTATTACTGT GACAATTGAT
  GCTGGTTAGC TGGAACTAAG AAATTAGCAG TGATTAAGAA GAGACCAGCA GGGGCTGGAG
  ATATGGCTCA GGGGTTAAGA GCACTGACTG CTCTTCAGAA GGTCCTGAGT TCAAATCCCA
  GCAACCACAT GGTGGCTCAC AACCATTCAT AATAACCTCT TCTGAAGAGT ATCTTGACGG
  Y
  TACAGTGTAC TTACATATAA TAAATAAAAA TAAAATAGAT TGTTCTGAAG AGAAGAAGAA
  GAAGAAGGAG GAGGAGGAGG AGGAGGAGGA GGAGGAGGAG GAGGAGGAAG AAGACCAGCA
  TCACTGGGAT AAAATCTTCT GGGAAGTGTT TTCAGAGAAC ATGAAGAAGC TGTGAGAGGC
  CAGAAAACAT TATTGGTGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321084834	CHEV_4_35954001	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs231579139					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:36006968 () rs orientation: forward

Symbol	Name	Function Class
Lingo2	leucine rich repeat and Ig domain containing 2	within coordinates
Tssr41223	transcription start site region 41223	961 bp upstream