rs231580544 SNP Detail

Summary

• ID
  rs231580544
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:27387137 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGAATGGGA AGTGGCTTGG
  CTTCAGTACT TTTATACTGT GGTGGAAAAC ATAAGCAACA CACAAAGGGG GCATGAAAAA
  CCCCAAACCA AAACCTGAGT TGTTATCAAA GAGCAAAAAA TGTTGAGCTC ATCAAACCCA
  AAGAGATATG GCAGGATAAA TCAATAGGAA TGGACAGTGA GAAAGAATTG ATAATCAAAA
  K
  AAGCCAACTC TCAGAGAAAC ACGTCAAGAA TCGTTACATG GAGACGTTTA CTTTGGGGAC
  TTATGAATTC CTGTTCGGAC ACATGTAAGG CTCAGTCCTG TCGTGCTTGC AGGCCACAGG
  CTATACAAAG GGTATCTGAA ACTGACATTC CTAATGAAGT TTTTTTTTTT TTATATATAA
  AATTTGGCCC TTAGAATAAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss385383295	MGP_WTSI_12_28022003	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs231580544					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss385383295	MGP_WTSI_12_28022003	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:27387137 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4506	CpG island 4506	1609 bp proximal
Rr464224	regulatory region 464224	986 bp distal
Rr464225	regulatory region 464225	within coordinates
Rr464226	regulatory region 464226	656 bp proximal
Sox11	SRY (sex determining region Y)-box 11	within coordinates
Tssr113042	transcription start site region 113042	915 bp downstream
Tssr113043	transcription start site region 113043	765 bp downstream
Tssr115961	transcription start site region 115961	1994 bp upstream
Tssr115962	transcription start site region 115962	1553 bp upstream
Tssr115963	transcription start site region 115963	1074 bp upstream
Tssr115964	transcription start site region 115964	699 bp upstream
Tssr115965	transcription start site region 115965	650 bp upstream
Tssr115966	transcription start site region 115966	571 bp upstream
Tssr115967	transcription start site region 115967	301 bp upstream
Tssr115968	transcription start site region 115968	287 bp upstream
Tssr115969	transcription start site region 115969	206 bp upstream
Tssr115970	transcription start site region 115970	171 bp upstream
Tssr115971	transcription start site region 115971	115 bp upstream
Tssr115972	transcription start site region 115972	2 bp upstream
Tssr115973	transcription start site region 115973	349 bp downstream
Tssr115974	transcription start site region 115974	397 bp downstream
Tssr115975	transcription start site region 115975	437 bp downstream
Tssr115976	transcription start site region 115976	459 bp downstream
Tssr115977	transcription start site region 115977	473 bp downstream
Tssr115978	transcription start site region 115978	1105 bp downstream
Tssr115979	transcription start site region 115979	1197 bp downstream
Tssr115980	transcription start site region 115980	1364 bp downstream