rs231585661 SNP Detail

Summary

• ID
  rs231585661
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:158225464 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTCTTCCT CTTCTTCCTC
  TTCTTCCTCT TCCTCTTCTT CTTCTTCCTT CTCCTTCTCT TACTCCTCCT CCTTCTCCTC
  CTCCTCCTTC TTCTCCTTCT CCTCCTCCTT CTATTCCTCC TTCTCCTCTT CCTCCTCCTC
  CTTCTCCTCC TCCTCCTCCT TCTCCTTCTT TTTAAAGATT TATTTGTTAT TATGTGTAAG
  Y
  ACACTGTAGC TGTCTTCAGA CACTCCAGGA GAGGTTATCA GATCTTATTA CAGATGGTTG
  TGGGCCACCA TATGGTTGCT AGGAATTAAC TCAGGACCTC TGGAAGGGCA GTCAGTGCTC
  TTAACTGCTG AGCCACCTCT CCAGCCCTTA TCTTTAATTT CTAATAACTA ATGATATTGC
  ATATATTTCC CCTTACCATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356281275	MGP_WTSI_2_158209280	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs231585661					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356281275	MGP_WTSI_2_158209280	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:158225464 () rs orientation: forward

Symbol	Name	Function Class
Snhg11	small nucleolar RNA host gene 11	within coordinates
Tssr21318	transcription start site region 21318	1370 bp downstream
Tssr21319	transcription start site region 21319	956 bp downstream
Tssr21320	transcription start site region 21320	920 bp downstream
Tssr21321	transcription start site region 21321	810 bp downstream
Tssr21322	transcription start site region 21322	687 bp downstream
Tssr21323	transcription start site region 21323	643 bp downstream
Tssr21324	transcription start site region 21324	605 bp downstream
Tssr21325	transcription start site region 21325	569 bp downstream
Tssr21326	transcription start site region 21326	545 bp downstream
Tssr21327	transcription start site region 21327	508 bp downstream
Tssr21328	transcription start site region 21328	462 bp downstream
Tssr21329	transcription start site region 21329	449 bp downstream
Tssr21330	transcription start site region 21330	360 bp downstream
Tssr21331	transcription start site region 21331	137 bp upstream
Tssr21332	transcription start site region 21332	274 bp upstream
Tssr21333	transcription start site region 21333	306 bp upstream
Tssr21334	transcription start site region 21334	1073 bp upstream
Tssr21335	transcription start site region 21335	1429 bp upstream
Tssr21336	transcription start site region 21336	1483 bp upstream
Tssr21337	transcription start site region 21337	1587 bp upstream
Tssr27228	transcription start site region 27228	326 bp upstream