rs231586141 SNP Detail

Summary

• ID
  rs231586141
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:25112995 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGTGCTGG TGTGTGCCAG
  CACTGGAGGC TGAAGAGGGC TTTGAGTTTC CCCTCCCCTC CCCTCCCCTC CCCTCCCCTC
  CCCTCCCCTC CCCTCCCCTC CCCTCCCCTC CCCTCCCCTC CCCTCCCTTC CTTTCCTCTC
  CTCTTCAATT CTCTCTCTCT CTCTCTTAAC AAAGAAAGAA AAACAAAAAT GAAGGGCTAG
  Y
  GGCTGCCTGG CGAGTGAGCT GATGATCTAA CTTCAATCCC CACTGTTCAC AGGAAGTAGA
  GAAATCAGTG CATTGTCCTT TGACTGCTAT AGTCATTTGG TGCATGCACA CTCCCCTCAT
  CCTTAAATAA CTGTAATGAA GAACGAAGGG CTAGGGATGT AGCTTAGAGA TAAGATGCTT
  GACTAGCATG CACAAGGCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322121694	CHEV_7_26198589	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs231586141					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:25112995 () rs orientation: forward

Symbol	Name	Function Class
4732471J01Rik	RIKEN cDNA 4732471J01 gene	within coordinates
Cxcl17	C-X-C motif chemokine ligand 17	684 bp upstream
Rr164493	regulatory region 164493	135 bp proximal
Rr170192	regulatory region 170192	1244 bp distal
Rr170193	regulatory region 170193	within coordinates
Tssr2143	transcription start site region 2143	768 bp upstream
Tssr2144	transcription start site region 2144	620 bp upstream
Tssr2145	transcription start site region 2145	596 bp upstream
Tssr2146	transcription start site region 2146	583 bp upstream
Tssr2147	transcription start site region 2147	538 bp upstream
Tssr71243	transcription start site region 71243	754 bp upstream
Tssr71244	transcription start site region 71244	729 bp upstream
Tssr71245	transcription start site region 71245	714 bp upstream
Tssr71246	transcription start site region 71246	685 bp upstream
Tssr71247	transcription start site region 71247	657 bp upstream