rs231589553 SNP Detail

Summary

• ID
  rs231589553
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:11175924 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTCTCTAC AATGTGTTTT
  AAATAATTAA TCAGAGGACA TATGAAGGTC CCTAAGCCCC TGCATATATT TAATCTCCTA
  AAATACTCAG TGGGAAACAT AGTCATGGAG AATATGTTTC CTGACTTAAG GCATAGCTGT
  GTGATCACTC TGTCATTTCT CCCCAACCCA GTAGGATCTA CTGAAGACTG GCTGGAGAAG
  M
  CAGTCCTTTC ATCTTTGAAC AAGAGGATCC TTAGCAGTCA CAGACTGGGG CAGAAGTGGG
  GACCATCACT CCAGCCCTTT GACCTTGTTC CCAGGCATGA CACACTTTTC TGCCAAATGT
  AATAGCCAAA ATATAATGGA GGCCTACTAT GTGCCAGACT TTGATGTCCT GAGGTCATCA
  TACTTCAGGG CTGGAAGCAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353088230	MGP_WTSI_2_11092740	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	A	C	C	C	C	A	A	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs231589553					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	A	C	C	C	C	A	A	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353088230	MGP_WTSI_2_11092740	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:11175924 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11198	CpG island 11198	899 bp proximal
Gm74583	predicted gene, 74583	within coordinates
Prkcq	protein kinase C, theta	998 bp upstream
Rr37311	regulatory region 37311	924 bp distal
Rr55368	regulatory region 55368	676 bp proximal
Rr57618	regulatory region 57618	124 bp distal
Tssr402	transcription start site region 402	1027 bp upstream
Tssr403	transcription start site region 403	1269 bp upstream
Tssr16098	transcription start site region 16098	768 bp upstream
Tssr16099	transcription start site region 16099	920 bp upstream
Tssr16100	transcription start site region 16100	941 bp upstream
Tssr16101	transcription start site region 16101	967 bp upstream
Tssr16102	transcription start site region 16102	1048 bp upstream
Tssr16103	transcription start site region 16103	1069 bp upstream
Tssr16104	transcription start site region 16104	1103 bp upstream
Tssr16105	transcription start site region 16105	1175 bp upstream
Tssr16106	transcription start site region 16106	1196 bp upstream
Tssr16107	transcription start site region 16107	1216 bp upstream
Tssr16108	transcription start site region 16108	1243 bp upstream
Tssr16109	transcription start site region 16109	1275 bp upstream
Tssr22604	transcription start site region 22604	1026 bp upstream