rs231592819 SNP Detail

Summary

• ID
  rs231592819
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:46608137 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    acttccagg ccagcctggg aaagagtatg
  tatgggtgtg tcaaaacgac aaaaCAATCT TGGAAAAAAG GACATGGGGT GGGGGGAATG
  GGCTGGGGCG ACGCGCAGTG ACGAGAATGC TAGGTCCCGT CCGCCCCCCG ACCTGCCTGC
  M
  CCTTGCCTAG CAGCCGTCTC ACGCCCTCAC AGTCGAACTC CATGGTCAGC AGGGGCGCGT
  TCTTCGGCCG CAGTCACTGG GCTTGTTTCA AAACACGCTG GGAACGGAGG CCGCACGGGC
  CCAAACTTCC GCAGAGGACG GTCCCCGCCT                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322200277	CHEV_7_54213759	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs231592819					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:46608137 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm39012	predicted gene, 39012			within coordinates
Rr646810	regulatory region 646810			484 bp distal
Rr646811	regulatory region 646811			within coordinates
Rr646812	regulatory region 646812			128 bp proximal
Rr646813	regulatory region 646813			150 bp proximal
Rr646814	regulatory region 646814			161 bp proximal
Tssr72574	transcription start site region 72574			55 bp downstream
Tssr72575	transcription start site region 72575			86 bp downstream
Uevld	UEV and lactate/malate dehyrogenase domains			Noncoding-Transcript-Variant
				Splice-Site