rs231608204 SNP Detail

Summary

• ID
  rs231608204
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:61677037 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GCTTTCGTG GGACATAATC AATGTATATT
  GAATGTAGGA GTGTAAGTAG ATCAGAACTC CCAGATCCAT AATTTAGGAC CAAACCATCC
  CCAGCAACTC AAACTCAGTT TAAGTTGACA TAGGAGCAAC TCTGGTAGGA AATGGAGGAT
  W
  CCCCGGGGGA TCTTATGGAT GCACTAAATT GCCATAAAAA CTGTCAGGAG CCACTAGAGA
  TTTAGATAGG AGGACCTGTG TTCTTTGCAC CATAACCAGC TGTGTCACCT GCTCAGTTTC
  TGAACACCAG TCTGTTTTGA TTTTGAATCT                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319741946	CHEV_1_61684452	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs231608204					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:61677037 () rs orientation: forward

Symbol	Name	Function Class
Cpgi308	CpG island 308	727 bp proximal
Pard3b	par-3 family cell polarity regulator beta	946 bp upstream
Rr29520	regulatory region 29520	363 bp proximal
Tssr95	transcription start site region 95	1034 bp upstream
Tssr6971	transcription start site region 6971	941 bp upstream
Tssr6972	transcription start site region 6972	991 bp upstream
Tssr6973	transcription start site region 6973	1064 bp upstream
Tssr6974	transcription start site region 6974	1115 bp upstream