rs231632614 SNP Detail

Summary

• ID
  rs231632614
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127582521 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACATTTTTT TCACATGTTC
  TTCAACTCAG CTTTGAAGAT TAAAGAGTTC AGATGGAGCA CAATCATGAC GCTAGGATTC
  ACAGGAGGCA GAAGGGTCTT GACTTGGAAG CTAGCCTGAG CTACATGACA AAACCTTGTC
  TAAAAAGAAA ACCGTTAACA AGAAAGAGAT CTGAGAGCAG AAACTCCGAT TTTTATGTTA
  S
  TTTATTGCCT GGGTTTATTT GGCACAATCA CTTGGCAATG TCTTATCTTG TACCTGCTTT
  GATACAGCTC AATCGAAAGA AGATTCCGTG GCTGTCTCTT CTTCCAAGAA GGAATAATAA
  ACGTTGATCA TTAACCAACG AAATTACATC CCTTACTGGA ATCTGCCTCA CTTAAATGTA
  CTTAAGTCCT TTCCCAGCCG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359647207	MGP_WTSI_3_127491790	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs231632614					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359647207	MGP_WTSI_3_127491790	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127582521 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13800	CpG island 13800	625 bp proximal
Cpgi13801	CpG island 13801	1766 bp proximal
Gm56817	predicted gene, 56817	within coordinates
Gm65064	predicted gene, 65064	1079 bp downstream
Gm65225	predicted gene, 65225	1521 bp downstream
Rr584859	regulatory region 584859	558 bp distal
Rr584860	regulatory region 584860	443 bp proximal
Rr584861	regulatory region 584861	926 bp proximal
Rr584862	regulatory region 584862	1051 bp proximal
Rr584863	regulatory region 584863	1375 bp proximal
Rr584864	regulatory region 584864	1943 bp proximal
Tifa	TRAF-interacting protein with forkhead-associated domain	3 bp upstream
Tssr31594	transcription start site region 31594	315 bp upstream
Tssr31595	transcription start site region 31595	332 bp upstream
Tssr31596	transcription start site region 31596	351 bp upstream
Tssr31597	transcription start site region 31597	399 bp upstream
Tssr31598	transcription start site region 31598	425 bp upstream
Tssr31599	transcription start site region 31599	930 bp upstream
Tssr31600	transcription start site region 31600	994 bp upstream
Tssr31601	transcription start site region 31601	1028 bp upstream
Tssr31602	transcription start site region 31602	1069 bp upstream
Tssr31603	transcription start site region 31603	1114 bp upstream
Tssr31604	transcription start site region 31604	1231 bp upstream
Tssr31605	transcription start site region 31605	1730 bp upstream
Tssr31606	transcription start site region 31606	1928 bp upstream
Tssr35598	transcription start site region 35598	870 bp downstream
Tssr35599	transcription start site region 35599	954 bp downstream
Tssr35600	transcription start site region 35600	971 bp downstream
Tssr35601	transcription start site region 35601	997 bp downstream
Tssr35602	transcription start site region 35602	1329 bp downstream