rs231637738 SNP Detail

Summary

• ID
  rs231637738
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:99759950 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCCCCTAC TTTCTGAGAA
  AACTTTCACC TCTACCTGGG GAGGCTACCT TCCTATTGTA AAGCAGATAC ACAACATTTG
  AATTCCTCCA AAGGTGGCCC TTCACTCTCA GCTTCTCTCC TTTCTACCTC TCTCCTTCCC
  TCCCGTCCCC TTCTCTCTCC TCACCTCTCC CTTCTCTTCT TTCCGCTCCC CCCTGGCCCC
  Y
  ACCTCCCTAG AGATTACTAA AGCAGAAGTA CCGTTCTGCG AACTTCCAGG AGAATTTCAA
  CATTTAGAAG CCAACTCCTG CTTAGATCTC ACCTGCTACA CTAGGGGATT GGAGATCCAG
  AGATACTAAT TCTACTGGGT GATGGTAGCT GCTTTGGAAA GAAATGAGAG AAATAACCGT
  GTTTGCAGAG TGAGGACTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MOLF/EiJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi5/Ianm	SJL/J	SPRET/EiJ	ST/bJ	SWR/J
ss378661144	MGP_WTSI_9_99778316	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	T	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MOLF/EiJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi5/Ianm	SJL/J	SPRET/EiJ	ST/bJ	SWR/J
rs231637738					SNP	C	C	C	T	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378661144	MGP_WTSI_9_99778316	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:99759950 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22205	CpG island 22205	1427 bp distal
Gm16004	predicted gene 16004	within coordinates
Gm67910	predicted gene, 67910	1173 bp downstream
Rr685464	regulatory region 685464	1738 bp distal
Rr685465	regulatory region 685465	1237 bp distal
Rr685466	regulatory region 685466	within coordinates
Sox14	SRY (sex determining region Y)-box 14	1727 bp upstream
Tssr91083	transcription start site region 91083	1704 bp upstream
Tssr91084	transcription start site region 91084	1685 bp upstream