rs231640005 SNP Detail

Summary

• ID
  rs231640005
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:130275836 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    atatcctgg gaaatgcatt ggggtgctgt
  ggaacagtgc ctgcttttaa ccgctgcacc ctccagcccc ACTATTCAGA TTTCTTACAT
  CATACATGCA TTACCCAACT CCTTTCTGAA AAAAAGTAAC TGCCTTCATT TAGGGGATGT
  Y
  GGTTATTTTA TTCATTTAGA AAAATTATAT GGCAGTATTA AATGAAGTTT TTTGTAATAC
  CAATGACCTT CACAAAATTG CTCATCTTTT TTCTTGTGAC ATCCAGGCTA TTTTTGTTAG
  TGTTAATGTT TATTTTTTAC ATATTTGCTT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321317898	CHEV_4_130059290	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs231640005					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130275836 () rs orientation: forward

Symbol	Name	Function Class
2900017G11Rik	RIKEN cDNA 2900017G11 gene	1258 bp downstream
Rr600533	regulatory region 600533	1422 bp distal
Snrnp40	small nuclear ribonucleoprotein 40 (U5)	within coordinates