rs231674389 SNP Detail

Summary

• ID
  rs231674389
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:155925707 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCACTGGGA CCTCAGCGGG
  GGCCCGGGCA GCCAACGGCG CCGACTTGTG GATATGTATT CGGCGGGTGA ACAGCGCGTG
  TACGAGCCGC GCGATCGCGA CCGCCTCCTG CTGTCGCCTT CTGCTTTCCA CGACGGCAAC
  TTCTCGCTGC TCATTCGCGG TACACTGTAG AACCGTAGTG GGCTGAAACT TTGGCAGAAA
  Y
  TGAAACCTTG GCGGCAGGGG TGAGGGTGGG GTGGAGGAGT GGGGAGGTGT GGTGGGTAGG
  GGGAGGGAGC TGAGAGGCCT TCCTAAGGTT GGAGCCTTGG ATGGGCGGGG CCCTAGAAGG
  GATTGGCCGA TTTTAGGGGA GGGGCCATAG AGAGGACGGG TTCCCTCAAT CTAAGGGTAT
  CTTCTGCCAA GCAGCTGTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321443282	CHEV_4_155215359	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs231674389					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155925707 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15490	CpG island 15490	within coordinates
Gm68629	predicted gene, 68629	within coordinates
Mxra8	matrix-remodelling associated 8	within coordinates
Mxra8os	matrix-remodelling associated 8, opposite strand	1072 bp upstream
Rr398927	regulatory region 398927	within coordinates
Tssr40724	transcription start site region 40724	1566 bp downstream
Tssr40725	transcription start site region 40725	1546 bp downstream
Tssr40726	transcription start site region 40726	1488 bp downstream
Tssr40727	transcription start site region 40727	1426 bp downstream
Tssr40728	transcription start site region 40728	1410 bp downstream
Tssr40729	transcription start site region 40729	142 bp downstream
Tssr40730	transcription start site region 40730	112 bp downstream
Tssr40731	transcription start site region 40731	83 bp downstream
Tssr40732	transcription start site region 40732	75 bp downstream
Tssr40733	transcription start site region 40733	162 bp upstream
Tssr40734	transcription start site region 40734	1801 bp upstream
Tssr44980	transcription start site region 44980	195 bp upstream
Tssr44981	transcription start site region 44981	146 bp upstream