rs231681659 SNP Detail

Summary

• ID
  rs231681659
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:52134384 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGGAAGCGC CAGTGACGAT
  GTGTAAGCAG TGTTAACCTG AAGTCAACCA TTAGTGTGAT CAGGCTCGTG ATTAATGGAG
  CCTTGTAGAT ATTAACAGGA CATCACCATC ACCACCATCA CCACCATCAC CACCTCCCAC
  TCCCCGCACA CTATCTAACT ATAGACCATT TAAACCTCAG CCCCTGTGAA ACGCTTTTGC
  Y
  TCTGCACACC TGGGCACCCT ACACCACTCA CTACAACTCT AGATGACATT AGACATAAAC
  AAGAACCAAT CTTTTAAAAA TCATTCATTT TCCTAGGAAA CTAGGTGTGC CAGCCCCTTT
  CAAAAATCGA ACAGCATTTG TCTGTCAGCC GGCAGGACTT ACCTGTTTTG GGAGGGTTTC
  TTTTAACTTT CATCCAGTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss368308146	MGP_WTSI_6_52107403	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs231681659					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368308146	MGP_WTSI_6_52107403	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:52134384 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17409	CpG island 17409	352 bp distal
Cpgi17410	CpG island 17410	332 bp proximal
Gm56050	predicted gene, 56050	1028 bp upstream
Hotairm1	Hoxa transcript antisense RNA, myeloid-specific 1	1120 bp upstream
Hotairm2	Hoxa transcript antisense RNA, myeloid-specific 2	within coordinates
Hoxa1	homeobox A1	within coordinates
Rr630345	regulatory region 630345	478 bp distal
Rr630346	regulatory region 630346	903 bp proximal
Tssr56499	transcription start site region 56499	1002 bp upstream
Tssr56500	transcription start site region 56500	1024 bp upstream
Tssr56501	transcription start site region 56501	1061 bp upstream
Tssr60974	transcription start site region 60974	888 bp downstream