rs231690250 SNP Detail

Summary

• ID
  rs231690250
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:6802757 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTTTGATTT TTAGAATATT GAGTTAATGT GTGTGTGTGT
  GTGTGTGTGT GTGTACATAT GTGGGTATAT ATGTATATAT ACATGGATAT ATATGTGTGT
  R
  TGTACATATG TATGTATGTA TTTATGCATA TATGTATATG TGTGTGTGAT ATGGTAATGC
  ACTCTCCTCA TTGTTTGGCT ACAAACATAA GAGTTTAAG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
ss395303719	MGP_WTSI_16_6984986	EVA_MGPV3	EVA_MGPV3	f	SNP	A	G	A	G	A	G	G	G	G	G	G	G	A	G	A	A	G	A	G	A	G	A	G	A	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
rs231690250					SNP	A	G	A	G	A	G	G	G	G	G	G	G	A	G	A	A	G	A	G	A	G	A	G	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395303719	MGP_WTSI_16_6984986	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:6802757 () rs orientation: forward

Symbol	Name	Function Class
Rbfox1	RNA binding protein, fox-1 homolog (C. elegans) 1	within coordinates
Rr511178	regulatory region 511178	1098 bp proximal
Tssr136955	transcription start site region 136955	1806 bp upstream