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rs231701696 SNP Detail
Summary
  • ID
    rs231701696
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr1:152684851 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          GGTGG GGGTGGCTAC GTATGTCATG
    R
    CGCACATGTG TCAATCAAAG GACGA                                      
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
LG/J
SM/J
ss320068363 CHEV_1_154656230 CHEVERUD SCREENING_POP f SNP A G
SNP Consensus Information
SNP Consensus Type
LG/J
SM/J
rs231701696 SNP A G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr1:152684851 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Ncf2 neutrophil cytosolic factor 2 within coordinates
Rr420547 regulatory region 420547 1200 bp distal
Rr420548 regulatory region 420548 584 bp proximal
Rr420549 regulatory region 420549 917 bp proximal
Tssr9423 transcription start site region 9423 1310 bp downstream
Tssr9424 transcription start site region 9424 1274 bp downstream
Tssr9425 transcription start site region 9425 1224 bp downstream
Tssr9426 transcription start site region 9426 1202 bp downstream
Tssr9427 transcription start site region 9427 1184 bp downstream
Tssr9428 transcription start site region 9428 1166 bp downstream
Tssr9429 transcription start site region 9429 1141 bp downstream
Tssr9430 transcription start site region 9430 1007 bp upstream
Tssr14234 transcription start site region 14234 787 bp upstream
Tssr14235 transcription start site region 14235 824 bp downstream
Tssr14236 transcription start site region 14236 1509 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory