rs231701696 SNP Detail

Summary

• ID
  rs231701696
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:152684851 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTGG GGGTGGCTAC GTATGTCATG
  R
  CGCACATGTG TCAATCAAAG GACGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320068363	CHEV_1_154656230	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs231701696					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152684851 () rs orientation: forward

Symbol	Name	Function Class
Ncf2	neutrophil cytosolic factor 2	Intron
Rr420547	regulatory region 420547	1200 bp distal
Rr420548	regulatory region 420548	584 bp proximal
Rr420549	regulatory region 420549	917 bp proximal
Tssr9423	transcription start site region 9423	1310 bp downstream
Tssr9424	transcription start site region 9424	1274 bp downstream
Tssr9425	transcription start site region 9425	1224 bp downstream
Tssr9426	transcription start site region 9426	1202 bp downstream
Tssr9427	transcription start site region 9427	1184 bp downstream
Tssr9428	transcription start site region 9428	1166 bp downstream
Tssr9429	transcription start site region 9429	1141 bp downstream
Tssr9430	transcription start site region 9430	1007 bp upstream
Tssr14234	transcription start site region 14234	787 bp upstream
Tssr14235	transcription start site region 14235	824 bp downstream
Tssr14236	transcription start site region 14236	1509 bp downstream