rs231708001 SNP Detail

Summary

• ID
  rs231708001
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:44383693 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACCAGCAG ATGGTGGCTT
  TGCTAACCTT TCACACCACC TCACTGGAGC TACAGTTTCA GAGACTACAC CCAGAGATTA
  GCAGCCCCAG TGCCAACTGC CGTCTATAAC ATGTTTGACA ATGATAACGA GGACGACAAT
  ACAATCGAAT ACACTCGAAT TACTTCCCAC CAAATTTGAT CACTTACTAA AAAAAAAAAA
  W
  TTCCAAAATG TAGCCTGTAA AAGATTTCTG CAAACCAATG TACTGATGAC TCTCCAGCCA
  GCCTCTTGAC TATTCCCACT CGATCTAAGG GGTCTCCGGG CTAAGGGAAG GAGTGAGACT
  GAGCTCACAG GCACTACAGA TTAGGAAAGA GATAAGGCAC CCAAAGCTAT TAGTACATTC
  ATCTGGAAAC TGTTATAAAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss402552078	MGP_WTSI_19_44469744	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs231708001					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss402552078	MGP_WTSI_19_44469744	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:44383693 () rs orientation: forward

Symbol	Name	Function Class
D19Mit67	DNA segment, Chr 19, Massachusetts Institute of Technology 67	1901 bp proximal
D19Mit67.2	DNA segment, Chr 19, Massachusetts Institute of Technology 67.2	1751 bp proximal
D19Nds1	DNA segment, Chr 19, Nuffield Department of Surgery 1	1859 bp proximal
Rr548236	regulatory region 548236	786 bp distal
Rr548237	regulatory region 548237	within coordinates
Rr548238	regulatory region 548238	1615 bp proximal
Scd1	stearoyl-Coenzyme A desaturase 1	within coordinates
Tssr5524	transcription start site region 5524	1105 bp downstream
Tssr156606	transcription start site region 156606	1154 bp upstream
Tssr156607	transcription start site region 156607	1478 bp upstream
Tssr156608	transcription start site region 156608	1887 bp upstream
Tssr159446	transcription start site region 159446	661 bp upstream
Tssr159447	transcription start site region 159447	486 bp upstream
Tssr159448	transcription start site region 159448	460 bp upstream
Tssr159449	transcription start site region 159449	397 bp upstream
Tssr159450	transcription start site region 159450	383 bp upstream
Tssr159451	transcription start site region 159451	303 bp upstream
Tssr159452	transcription start site region 159452	9 bp upstream
Tssr159453	transcription start site region 159453	37 bp downstream
Tssr159454	transcription start site region 159454	69 bp downstream
Tssr159455	transcription start site region 159455	362 bp downstream
Tssr159456	transcription start site region 159456	484 bp downstream
Tssr159457	transcription start site region 159457	528 bp downstream
Tssr159458	transcription start site region 159458	558 bp downstream
Tssr159459	transcription start site region 159459	648 bp downstream
Tssr159460	transcription start site region 159460	685 bp downstream
Tssr159461	transcription start site region 159461	744 bp downstream
Tssr159462	transcription start site region 159462	772 bp downstream
Tssr159463	transcription start site region 159463	818 bp downstream
Tssr159464	transcription start site region 159464	841 bp downstream
Tssr159465	transcription start site region 159465	865 bp downstream
Tssr159466	transcription start site region 159466	886 bp downstream
Tssr159467	transcription start site region 159467	939 bp downstream
Tssr159468	transcription start site region 159468	1187 bp downstream
Tssr159469	transcription start site region 159469	1257 bp downstream
Tssr159470	transcription start site region 159470	1274 bp downstream
Tssr159471	transcription start site region 159471	1291 bp downstream
Tssr159472	transcription start site region 159472	1327 bp downstream
Tssr159473	transcription start site region 159473	1346 bp downstream
Tssr159474	transcription start site region 159474	1371 bp downstream
Tssr159475	transcription start site region 159475	1416 bp downstream
Tssr159476	transcription start site region 159476	1434 bp downstream
Tssr159477	transcription start site region 159477	1454 bp downstream
Tssr159478	transcription start site region 159478	1464 bp downstream
Tssr159479	transcription start site region 159479	1488 bp downstream
Tssr159480	transcription start site region 159480	1516 bp downstream
Tssr159481	transcription start site region 159481	1565 bp downstream
Tssr159482	transcription start site region 159482	1665 bp downstream
Tssr159483	transcription start site region 159483	1756 bp downstream
Tssr159484	transcription start site region 159484	1790 bp downstream
Tssr159485	transcription start site region 159485	1916 bp downstream
Tssr159486	transcription start site region 159486	1923 bp downstream