rs231713670 SNP Detail

Summary

• ID
  rs231713670
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:7351113 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAACATTTA ACCCATCATC
  TCAGTACCCT TACTAATATC TCCTGGAAAT CCTCAGTTAT ACAATTCATT CATATGGAAT
  ACATAAGGAG AAATTCAAGA ACATGGTCTC CCTACTCCAA ATCCTCCTTC TCTGGCTGAT
  TTTTCATGTG ATATGTAGCT ATGTAATTTA CATACCCCAT GTCTACCACA AAGGTAGACA
  Y
  ATACCCTAAA GCTTATCAAA ATTTTGATAA GGACATTTGA AGACTATAAG GTGCATCATG
  TATGACTTAC TACTTGCTGA ACTACAACTT CTTAACCAGA CATAGCCATG TGTCTGAGGT
  TTTTCCTGGG TTATTTGGGG ATTGGGTGTA ACCTCTTCAT CAACTGATAC TGCTTTGGAA
  TCTAATGAAC CCTAGAAATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss376560284	MGP_WTSI_9_7351113	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs231713670					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss376560284	MGP_WTSI_9_7351113	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:7351113 () rs orientation: forward

Symbol	Name	Function Class
Mmp12	matrix metallopeptidase 12	Intron
Tssr83699	transcription start site region 83699	1995 bp downstream
Tssr83700	transcription start site region 83700	1934 bp downstream
Tssr83701	transcription start site region 83701	1886 bp downstream
Tssr83702	transcription start site region 83702	1864 bp downstream
Tssr83703	transcription start site region 83703	1382 bp downstream
Tssr83704	transcription start site region 83704	1348 bp downstream
Tssr83705	transcription start site region 83705	1086 bp downstream
Tssr83706	transcription start site region 83706	1059 bp downstream
Tssr83707	transcription start site region 83707	1037 bp downstream
Tssr83708	transcription start site region 83708	1019 bp downstream
Tssr83709	transcription start site region 83709	996 bp downstream
Tssr83710	transcription start site region 83710	479 bp downstream
Tssr83711	transcription start site region 83711	within coordinates
Tssr83712	transcription start site region 83712	860 bp upstream
Tssr83713	transcription start site region 83713	1262 bp upstream
Tssr83714	transcription start site region 83714	1434 bp upstream
Tssr83715	transcription start site region 83715	1486 bp upstream
Tssr83716	transcription start site region 83716	1757 bp upstream
Tssr83717	transcription start site region 83717	1798 bp upstream
Tssr83718	transcription start site region 83718	1818 bp upstream
Tssr83719	transcription start site region 83719	1844 bp upstream
Tssr83720	transcription start site region 83720	1873 bp upstream
Tssr88066	transcription start site region 88066	990 bp upstream
Tssr88067	transcription start site region 88067	1867 bp downstream
Tssr88068	transcription start site region 88068	1915 bp downstream