rs231716596 SNP Detail

Summary

• ID
  rs231716596
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:6553204 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTGTCTTTT ATGCACGAGT CACCAGCCTG
  GATCTGGGAG AGGTTCCTAG CAAGGACAAA AGTCCCAGTG AGCTGCACAA GAGTTCCCTG
  AGTTCATCTC TTTGGCAGTG TCCTGTAGAG CCTTGTCTTT GTAGTCTCCT CCTCCTCCTC
  Y
  TCTTCttcct cctcctcttt aataagttgt attctataaa gaggagatgt tacagctcac
  cctcAAGTGT CACTGTACAG CTCTCTGATT CAGAGCTAAC TCACATGCAT AAAAAGAGAA
  CAGGGGCCTC ATCCATTCTA AGCTTTGAAA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319618706	CHEV_1_6473061	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs231716596					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:6553204 () rs orientation: forward

Symbol	Name	Function Class
Rr407512	regulatory region 407512	413 bp proximal
Rr407513	regulatory region 407513	461 bp proximal
Tssr5834	transcription start site region 5834	194 bp downstream