rs231721427 SNP Detail

Summary

• ID
  rs231721427
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:67054924 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTTTTCTG AATTTTGGAC
  TGGATTTAAT GTCAAAAATA CAGAAATGAG CTGGGCAGTG GTGGTGCACG CCTTTAATCC
  CAGCACTTGG GAGCCAGAGG CAGGCAGATT TCTGAGTTCG AGGCCAGCCT GGTTTACAAA
  GTGAGTTCCA GGACAGCCAG CAGGGCTATA CAGAAAAACC CTGTCTCAAA AAAAAAAAAA
  M
  AAAACAAAAA AAACAAACAA AAAAAAAACA GAAATGTAGA CAAAATTATT CAGTAATAAA
  GCCAGTGTTC TGAATCCAAT ACAAAATTAG TTGCTGATAC ATAGCTCAAA TATAAACAGT
  GTACTTTATT AAAGCTCAAT AGTGGTCTTA CCATGCTGTC TTTCAGACTT AAGCTGAGAC
  CCAGGACAGC ATAGAACTGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
ss388902878	MGP_WTSI_13_67007796	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
rs231721427					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss388902878	MGP_WTSI_13_67007796	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:67054924 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5796	CpG island 5796	1487 bp distal
Mterf3	mitochondrial transcription termination factor 3	108 bp downstream
Ramacl	RNA guanine-7 methyltransferase activating subunit like	within coordinates
Rr273407	regulatory region 273407	677 bp proximal
Rr281575	regulatory region 281575	723 bp distal
Rr369737	regulatory region 369737	1428 bp downstream
Tssr123084	transcription start site region 123084	1490 bp upstream
Uqcrb	ubiquinol-cytochrome c reductase binding protein	1482 bp upstream