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rs231724239 SNP Detail
Summary
  • ID
    rs231724239
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr4:57957050 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GGCCATGCTG CAGTTCGACT
    CAAAGTGCTG AGTAACGATG ACCAGGAAGT GTCTCAGTGC GCGTCCTCGC CAACTTTCTG
    GGTAGTTCTT TGCCGCTTCT TTCTCCTCTC TCTCTCCTAT TCCTTAACTT TAACAGGTGA
    ACCTGCTACT GGGAGAGGCA CAGAGCCGTT TAGAGCCCTG TTCTGTGCCC CATGCACATG
    Y
    AGGCATGATA GAGATCGGAT AGTCTAGCTC CCAGCATTGT CTTGAAGGAT TTAAGGGCTT
    GAAAACTGAC TGAGGACAGC GTTTGGCCCA TAAGGAAGCA CTCAATGAAT TATTCTAATT
    ATAGTCATCG CGAGCGCTAA TTAAGCTTGC GTGGTGCCTT GTGGGGCCTT GCTGAGTTTG
    GCTGCCTTGT ATTTACAATG                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss361657868 MGP_WTSI_4_57969922 EVA_MGPV3 EVA_MGPV3 f SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs231724239 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss361657868 MGP_WTSI_4_57969922 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr4:57957050 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi14335 CpG island 14335 99 bp distal
Gm35344 predicted gene, 35344 within coordinates
Gm57068 predicted gene, 57068 within coordinates
Rr398279 regulatory region 398279 441 bp downstream
Rr592848 regulatory region 592848 650 bp distal
Rr592849 regulatory region 592849 1264 bp distal
Rr592850 regulatory region 592850 415 bp distal
Rr592851 regulatory region 592851 602 bp distal
Rr592852 regulatory region 592852 within coordinates
Rr592853 regulatory region 592853 185 bp proximal
Tssr1183 transcription start site region 1183 692 bp upstream
Tssr1184 transcription start site region 1184 626 bp upstream
Tssr37396 transcription start site region 37396 424 bp downstream
Tssr37397 transcription start site region 37397 83 bp downstream
Tssr41866 transcription start site region 41866 752 bp upstream
Txn1 thioredoxin 1 639 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory