rs231726718 SNP Detail

Summary

• ID
  rs231726718
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:35906525 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTAGCATCT TACCAACTTT
  TGTTTTCTTT CATTTCTTAG AACCCAGAGG GTAGACTTTA GGTAGTAAAT CTTTTTTTTT
  TAAGATTTAT TTATTATATG TAAATACACT GTTGATGTCT TCAGACACAC CAGAAGGGGC
  ATCAGATCTC ATTACAGATG GCTGTGAGCC ACCATGTGGT TACTGGGAAT TGAACTCAGG
  R
  CCTTTGGAAG AGCAGTCAGT GCTCTTAACC ACTGATCCAT CTCTCCAGCC CAGGTAGTAA
  ATCTTGTACT AAAATGAAGC AGGGTCTTTG CACAAAGAAG TTTGATCAAA AGAAAAACTG
  TGTAAGGGAT AAGAACAAAG TAAGAAACAT CTAAGTAACA TGTATATGTA TTTCTAAGAC
  TTTAGTAGTC TTTATGGAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325583893	CHEV_18_35933126	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs231726718					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:35906525 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9842	CpG island 9842	979 bp distal
Rr393530	regulatory region 393530	1227 bp downstream
Rr535947	regulatory region 535947	1904 bp distal
Rr535948	regulatory region 535948	686 bp distal
Tssr150552	transcription start site region 150552	1985 bp downstream
Tssr150553	transcription start site region 150553	1914 bp downstream
Tssr150554	transcription start site region 150554	1873 bp downstream
Tssr150555	transcription start site region 150555	1857 bp downstream
Tssr150556	transcription start site region 150556	1801 bp downstream
Tssr150557	transcription start site region 150557	1762 bp downstream
Tssr150558	transcription start site region 150558	1731 bp downstream
Tssr150559	transcription start site region 150559	1518 bp downstream
Tssr150560	transcription start site region 150560	1341 bp downstream
Tssr150561	transcription start site region 150561	1307 bp downstream
Tssr150562	transcription start site region 150562	329 bp upstream
Ube2d2a	ubiquitin-conjugating enzyme E2D 2A	within coordinates