rs231736024 SNP Detail

Summary

• ID
  rs231736024
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:94965465 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTTCTCCA GAGCTGGGGA
  AACTAAAGCT CAGGTGTTGG AACCAGAGCC GAGACACAGC AGAGGAACTG GAACACTCAG
  CTTTTCTCGC TACAATGTCA GGTGCCTCTC ACAGGTCAGC AGAGATAAGA GGGAACACAC
  AGATCCAGGT ATAAGCTCAT CCCGGGGGGA AACCGGCCCC GGAGAAAGTA ATATCATATC
  R
  TCCTCAAGGT CACAGAATAG AGCGGGAGAT GTTGCAGAAT CTCTTCTAGT GTGTTAGTTC
  CGGCCATGCA CATTCAACAA CAGAACATCT GAGAACTCTG GACTGGGCTG GGGGGAGGCA
  ACAGCACTGC TGTAGCAACT AACTATTATC AGAGGGCCTC AGAAAGGTAG AAGGTTAAAT
  CTGCCCAGCC AGGACAGGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384338855	MGP_WTSI_11_94935953	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs231736024					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384338855	MGP_WTSI_11_94935953	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:94965465 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3575	CpG island 3575	1200 bp proximal
Gm53645	predicted gene, 53645	1545 bp upstream
Gm57362	predicted gene, 57362	1789 bp upstream
Itga3	integrin alpha 3	within coordinates
Rr454942	regulatory region 454942	1333 bp distal
Rr454943	regulatory region 454943	within coordinates
Rr454944	regulatory region 454944	996 bp proximal
Rr454945	regulatory region 454945	1299 bp proximal
Rr454946	regulatory region 454946	1514 bp proximal
Rr454947	regulatory region 454947	1780 bp proximal
Rr454948	regulatory region 454948	1800 bp proximal
Tssr3652	transcription start site region 3652	1953 bp downstream
Tssr110254	transcription start site region 110254	1927 bp downstream