rs231745712 SNP Detail

Summary

• ID
  rs231745712
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:104424102 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTATTGAA CGGATTTTTT
  TCTTTTCTTT TCTTTTTTTC TTTTCTTTTC TTTTTTTTTT TTTTTAACTG CCAAATCGGA
  AAGTCTGTTC TTTAAAACTC CAGTTAGCGA GACTATAGGG TTTTATTCTG GCTGCAGAAT
  AACTGGCTGG TGTGGCTTTG CAAGGGGGGG CGGGCAGGCA AAAAGAAAAG ACAGAAAAGA
  R
  TACGTGAGTC GTCCAGTGCA ATCTCTATTG TTTGAAATTT ACTTTTTATC AGAATTTGAA
  GATGAAAACG GTAAGGAAGA CTTCACAATA TTCAATGAAA CCTTAAAAAA AAAAACCCAA
  CAACTTGTGC TTTGCTTATC TTCCGAAAAA CGCTTAGATA TTCTCTCTCT GTCTCTCTCT
  CCCTCTCCCT CTCCCTCTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324514939	CHEV_13_105077674	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs231745712					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:104424102 () rs orientation: forward

Symbol	Name	Function Class
Adamts6	ADAM metallopeptidase with thrombospondin type 1 motif 6	241 bp upstream
Gm60746	predicted gene, 60746	379 bp upstream
Gm60750	predicted gene, 60750	241 bp downstream
Rr369763	regulatory region 369763	421 bp downstream
Rr403946	regulatory region 403946	1276 bp downstream
Rr485428	regulatory region 485428	1985 bp distal
Rr485430	regulatory region 485430	484 bp distal
Rr485431	regulatory region 485431	within coordinates
Rr485432	regulatory region 485432	290 bp proximal
Rr485433	regulatory region 485433	1695 bp proximal
Tssr120915	transcription start site region 120915	532 bp downstream
Tssr120916	transcription start site region 120916	487 bp downstream
Tssr120917	transcription start site region 120917	462 bp downstream
Tssr120918	transcription start site region 120918	447 bp downstream
Tssr120919	transcription start site region 120919	215 bp downstream
Tssr120920	transcription start site region 120920	128 bp downstream
Tssr120921	transcription start site region 120921	96 bp downstream
Tssr120922	transcription start site region 120922	70 bp downstream
Tssr120923	transcription start site region 120923	261 bp upstream
Tssr120924	transcription start site region 120924	308 bp upstream
Tssr120925	transcription start site region 120925	338 bp upstream